Gene Expression across Normal and Tumor tissue Home | Document | SiteMap   
Gene Expression across Normal and Tumor tissue
 
 
 
 
 
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 • Overview
  - Introduction
- DB description
- Method
- Outlier detection
- Analysis of
   Laboratory Effects

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 • Analysis
  - ERBB2 (HER2)
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- Cancer Cell Line
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  Information >> Cancer Cell Line
 
 MWe also collected and processed cancer cell line data sets across diverse tissue types. Broad/Sanger Cancer Cell Line project ( http://www.broadinstitute.org/cgi-bin/cancer/publications/ pub_paper.cgi?mode=view&paper_id=189) and GSK's cell line project (https://array.nci.nih.gov/ caarray/project/woost-00041/) provided the most abundant expression data sets.

Number of cell lines samples for each tissue type (U133plus2 and U133A) (From DB)

Tissue U133plus2 U133A Total
adrenal gland
biliary tract
bladder30 40 70 
blood229 142 371 
bone12 32 44 
brain149 117 266 
breast239 199 438 
cervix23 23 46 
colon143 56 199 
endometrium11 11 
esophagus12 25 37 
eye
kidney29 40 69 
leukemia
liver33 16 49 
lung358 325 683 
lymphoma73 74 
myeloma24 31 
others10 10 
ovary24 43 67 
pancreas50 18 68 
placenta11 
prostate12 18 30 
skin129 73 202 
soft tissue19 19 
stomach80 24 104 
testis
thyroid12 13 25 
upper aerodigestive 24 24 
urinary tract20 20 
vulva12 
connective tissue
ewt
muscle10 10 
pharynx
rectum
sarcoma
synovial membrane
uterus21 21 
Total 1,738 1,336 3,074

Data Summary
 • Data sets
  - U133Plus2 : 306
- U133A : 241
 • Samples
  - U133Plus2 : 24,300
- U133A : 16,400
 • Probes
  - U133Plus2 : 54,613
- U133A : 22,215
 
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